install.packages("CohortCharacteristics")CohortCharacteristics
A R package to Characterise cohorts
CohortCharacteristics
Website
Cohort characteristics is on cran:
You can also install the development version from our github repo:
The documentation and vignettes of the packages can be found in our page: https://darwin-eu.github.io/CohortCharacteristics/
Let’s get started
For this presentation we will use the GiBleed dataset from omock.
Section title
Person table
Let’s see the person table:
# Source: table<person> [?? x 18]
# Database: DuckDB 1.4.0 [unknown@Linux 6.11.0-1018-azure:R 4.4.1//tmp/RtmpxnP7A5/file69f72fc425d4.duckdb]
person_id gender_concept_id year_of_birth month_of_birth day_of_birth birth_datetime race_concept_id
<int> <int> <int> <int> <int> <dttm> <int>
1 6 8532 1963 12 31 1963-12-31 00:00:00 8516
2 123 8507 1950 4 12 1950-04-12 00:00:00 8527
3 129 8507 1974 10 7 1974-10-07 00:00:00 8527
4 16 8532 1971 10 13 1971-10-13 00:00:00 8527
5 65 8532 1967 3 31 1967-03-31 00:00:00 8516
6 74 8532 1972 1 5 1972-01-05 00:00:00 8527
7 42 8532 1909 11 2 1909-11-02 00:00:00 8527
8 187 8507 1945 7 23 1945-07-23 00:00:00 8527
9 18 8532 1965 11 17 1965-11-17 00:00:00 8527
10 111 8532 1975 5 2 1975-05-02 00:00:00 8527
# ℹ more rows
# ℹ 11 more variables: ethnicity_concept_id <int>, location_id <int>, provider_id <int>, care_site_id <int>,
# person_source_value <chr>, gender_source_value <chr>, gender_source_concept_id <int>, race_source_value <chr>,
# race_source_concept_id <int>, ethnicity_source_value <chr>, ethnicity_source_concept_id <int>Snapshot
| Estimate |
Database name
|
|---|---|
| GiBleed | |
| General | |
| Snapshot date | 2025-09-22 |
| Person count | 2,694 |
| Vocabulary version | v5.0 18-JAN-19 |
| Observation period | |
| N | 5,343 |
| Start date | 1908-09-22 |
| End date | 2019-07-03 |
| Cdm | |
| Source name | Synthea synthetic health database |
| Version | v5.3.1 |
| Holder name | OHDSI Community |
| Release date | 2019-05-25 |
| Description | SyntheaTM is a Synthetic Patient Population Simulator. The goal is to output synthetic, realistic (but not real), patient data and associated health records in a variety of formats. |
| Documentation reference | https://synthetichealth.github.io/synthea/ |
| Source type | duckdb |
CohortCharacteristics
👉 Packages website
👉 CRAN link
👉 Manual
CohortCharacteristics: R package to Characterise cohorts