Read documentation chunks
documentationChunks.RdRead documentation chunks
Examples
# \donttest{
documentationChunks()
#> ℹ Retrieving information links.
#> ℹ Reading information from
#> <https://oxford-pharmacoepi.github.io/Tidy-R-programming-with-OMOP/>
#> ℹ Reading information from
#> <https://oxford-pharmacoepi.github.io/Tidy-R-programming-with-OMOP/adding_features.html>
#> ℹ Reading information from
#> <https://oxford-pharmacoepi.github.io/Tidy-R-programming-with-OMOP/cdm_reference.html>
#> ℹ Reading information from
#> <https://oxford-pharmacoepi.github.io/Tidy-R-programming-with-OMOP/creating_cohorts.html>
#> ℹ Reading information from
#> <https://oxford-pharmacoepi.github.io/Tidy-R-programming-with-OMOP/dbplyr_packages.html>
#> ℹ Reading information from
#> <https://oxford-pharmacoepi.github.io/Tidy-R-programming-with-OMOP/exploring_the_cdm.html>
#> ℹ Reading information from
#> <https://oxford-pharmacoepi.github.io/Tidy-R-programming-with-OMOP/intro.html>
#> ℹ Reading information from
#> <https://oxford-pharmacoepi.github.io/Tidy-R-programming-with-OMOP/omop.html>
#> ℹ Reading information from
#> <https://oxford-pharmacoepi.github.io/Tidy-R-programming-with-OMOP/tidyverse_expressions.html>
#> ℹ Reading information from
#> <https://oxford-pharmacoepi.github.io/Tidy-R-programming-with-OMOP/tidyverse_verbs.html>
#> ℹ Reading information from
#> <https://oxford-pharmacoepi.github.io/Tidy-R-programming-with-OMOP/working_with_cohorts.html>
#> ℹ Reading information from
#> <https://oxford-pharmacoepi.github.io/Tidy-R-programming-with-OMOP/working_with_databases_from_r.html>
#> ℹ Reading information from <https://darwin-eu.github.io/CDMConnector/>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/articles/a01_getting-started.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/articles/a02_cohorts.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/articles/a03_dbplyr.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/articles/a04_DBI_connection_examples.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/articles/a06_using_cdm_attributes.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/authors.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/news/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/pare_report.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/reference/cdmFromCon.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/reference/eunomiaDir.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/reference/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CDMConnector/reference/pipe.html>
#> ℹ Reading information from <https://darwin-eu.github.io/omopgenerics/>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/articles/cdm_reference.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/articles/codelists.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/articles/cohorts.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/articles/expanding_omopgenerics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/articles/logging.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/articles/reexport.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/articles/summarised_result.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/authors.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/news/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/achillesColumns.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/achillesTables.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/attrition.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/cdmFromTables.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/cohortColumns.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/cohortCount.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/cohortTables.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/newCodelist.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/newCohortTable.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/newConceptSetExpression.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/omopColumns.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/omopTables.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/omopgenerics/reference/settings.html>
#> ℹ Reading information from <https://ohdsi.github.io/CohortConstructor/>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a00_introduction.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a01_building_base_cohorts.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a02_cohort_table_requirements.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a03_require_demographics.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a04_require_intersections.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a05_update_cohort_start_end.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a06_concatanate_cohorts.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a07_filter_cohorts.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a08_split_cohorts.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a09_combine_cohorts.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a10_match_cohorts.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a11_benchmark.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/articles/a12_behind_the_scenes.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/authors.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/index.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/news/index.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/reference/conceptCohort.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/reference/index.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/reference/padCohortEnd.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/reference/requireCohortIntersect.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/reference/requireDemographics.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/reference/requireInDateRange.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/CohortConstructor/reference/unionCohorts.html>
#> ℹ Reading information from <https://darwin-eu.github.io/visOmopResults/>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/visOmopResults/articles/a01_tables.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/visOmopResults/articles/a02_plots.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/visOmopResults/authors.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/visOmopResults/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/visOmopResults/news/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/visOmopResults/reference/barPlot.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/visOmopResults/reference/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/visOmopResults/reference/mockSummarisedResult.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/visOmopResults/reference/themeVisOmop.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/visOmopResults/reference/visOmopTable.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/visOmopResults/reference/visTable.html>
#> ℹ Reading information from <https://ohdsi.github.io/PhenotypeR/>
#> ℹ Reading information from
#> <https://ohdsi.github.io/PhenotypeR/articles/CodelistDiagnostics.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/PhenotypeR/articles/CohortDiagnostics.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/PhenotypeR/articles/DatabaseDiagnostics.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/PhenotypeR/articles/PhenotypeDiagnostics.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/PhenotypeR/articles/PhenotypeExpectations.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/PhenotypeR/articles/PopulationDiagnostics.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/PhenotypeR/articles/ShinyDiagnostics.html>
#> ℹ Reading information from <https://ohdsi.github.io/PhenotypeR/authors.html>
#> ℹ Reading information from <https://ohdsi.github.io/PhenotypeR/index.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/PhenotypeR/reference/getCohortExpectations.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/PhenotypeR/reference/index.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/PhenotypeR/reference/phenotypeDiagnostics.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/PhenotypeR/reference/shinyDiagnostics.html>
#> ℹ Reading information from <https://ohdsi.github.io/OmopViewer/>
#> ℹ Reading information from
#> <https://ohdsi.github.io/OmopViewer/articles/background.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/OmopViewer/articles/dynamic_app.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/OmopViewer/articles/edit_static_content.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/OmopViewer/articles/export_static_app.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/OmopViewer/articles/extending_omopviewer.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/OmopViewer/articles/theming.html>
#> ℹ Reading information from <https://ohdsi.github.io/OmopViewer/authors.html>
#> ℹ Reading information from <https://ohdsi.github.io/OmopViewer/index.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/OmopViewer/reference/exportStaticApp.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/OmopViewer/reference/index.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/OmopViewer/reference/launchDynamicApp.html>
#> ℹ Reading information from <https://darwin-eu.github.io/DrugUtilisation/>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/articles/create_cohorts.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/articles/daily_dose_calculation.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/articles/drug_restart.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/articles/drug_utilisation.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/articles/indication.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/articles/mock_data.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/articles/summarise_treatments.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/articles/treatment_discontinuation.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/authors.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/news/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/reference/generateIngredientCohortSet.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/reference/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/reference/mockDrugUtilisation.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/reference/requireIsFirstDrugEntry.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/reference/requireObservationBeforeDrug.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/reference/summariseDrugUtilisation.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugUtilisation/reference/summariseIndication.html>
#> ℹ Reading information from <https://darwin-eu.github.io/IncidencePrevalence/>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/articles/a01_Introduction_to_IncidencePrevalence.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/articles/a02_Creating_denominator_populations.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/articles/a03_Creating_target_denominator_populations.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/articles/a04_Calculating_prevalence.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/articles/a05_Calculating_incidence.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/articles/a06_Working_with_IncidencePrevalence_Results.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/articles/a07_benchmark.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/authors.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/news/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/reference/estimateIncidence.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/reference/estimatePeriodPrevalence.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/reference/estimatePointPrevalence.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/reference/generateDenominatorCohortSet.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/reference/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/reference/mockIncidencePrevalence.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/reference/plotIncidence.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/IncidencePrevalence/reference/plotPrevalence.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/articles/DaysSupply.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/articles/DiagnosticsSummary.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/articles/DrugDose.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/articles/DrugDuration.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/articles/DrugSig.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/articles/DrugSourceConcepts.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/articles/DrugTypes.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/articles/IntroductionToDrugExposureDiagnostics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/articles/Missingness.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/articles/Quantity.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/articles/Routes.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/articles/VerbatimEndDate.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/authors.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/news/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/reference/executeChecks.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/reference/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/reference/mockDrugExposure.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/reference/pipe.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/DrugExposureDiagnostics/reference/writeResultToDisk.html>
#> ℹ Reading information from <https://ohdsi.github.io/MeasurementDiagnostics/>
#> ℹ Reading information from
#> <https://ohdsi.github.io/MeasurementDiagnostics/articles/summariseMeasurementUse.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/MeasurementDiagnostics/authors.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/MeasurementDiagnostics/index.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/MeasurementDiagnostics/reference/index.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/MeasurementDiagnostics/reference/plotMeasurementTimings.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/MeasurementDiagnostics/reference/summariseMeasurementUse.html>
#> ℹ Reading information from <https://darwin-eu.github.io/PatientProfiles/>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/articles/cohort-intersect.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/articles/concept-intersect.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/articles/demographics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/articles/summarise.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/articles/table-intersect.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/authors.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/news/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/reference/addAge.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/reference/addCohortIntersectCount.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/reference/addCohortIntersectDate.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/reference/addCohortIntersectDays.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/reference/addCohortIntersectFlag.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/reference/addPriorObservation.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/reference/addSex.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/reference/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/reference/mockDisconnect.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/PatientProfiles/reference/mockPatientProfiles.html>
#> ℹ Reading information from <https://darwin-eu.github.io/CohortCharacteristics/>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/articles/summarise_characteristics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/articles/summarise_cohort_entries.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/articles/summarise_cohort_overlap.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/articles/summarise_cohort_timing.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/articles/summarise_large_scale_characteristics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/authors.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/news/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/mockCohortCharacteristics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/plotCharacteristics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/plotCohortAttrition.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/plotCohortCount.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/plotCohortOverlap.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/plotCohortTiming.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/plotComparedLargeScaleCharacteristics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/plotLargeScaleCharacteristics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/summariseCharacteristics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/summariseCohortAttrition.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/summariseCohortCount.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/summariseCohortOverlap.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/summariseCohortTiming.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/summariseLargeScaleCharacteristics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/tableCharacteristics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/tableCohortAttrition.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/tableCohortCount.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/tableCohortOverlap.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/tableCohortTiming.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CohortCharacteristics/reference/tableTopLargeScaleCharacteristics.html>
#> ℹ Reading information from <https://OHDSI.github.io/OmopSketch/>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/articles/characterisation.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/articles/database_characteristics.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/articles/missing_data.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/articles/summarise_clinical_tables_records.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/articles/summarise_concept_id_counts.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/articles/summarise_observation_period.html>
#> ℹ Reading information from <https://OHDSI.github.io/OmopSketch/authors.html>
#> ℹ Reading information from <https://OHDSI.github.io/OmopSketch/index.html>
#> ℹ Reading information from <https://OHDSI.github.io/OmopSketch/news/index.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/index.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/plotConceptSetCounts.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/plotInObservation.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/plotObservationPeriod.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/plotRecordCount.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/summariseClinicalRecords.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/summariseConceptSetCounts.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/summariseInObservation.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/summariseObservationPeriod.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/summariseOmopSnapshot.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/summariseRecordCount.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/tableClinicalRecords.html>
#> ℹ Reading information from
#> <https://OHDSI.github.io/OmopSketch/reference/tableObservationPeriod.html>
#> ℹ Reading information from
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#> ℹ Reading information from <https://darwin-eu.github.io/CodelistGenerator/>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/articles/a01_GettingOmopCdmVocabularies.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/articles/a02_ExploreCDMvocabulary.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/articles/a03_GenerateCandidateCodelist.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/articles/a04_GenerateVocabularyBasedCodelist.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/articles/a04b_icd_codes.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/articles/a05_ExtractCodelistFromJSONfile.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/articles/a06_CreateSubsetsFromCodelist.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/articles/a07_RunCodelistDiagnostics.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/authors.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/news/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/reference/getCandidateCodes.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/reference/getDrugIngredientCodes.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/reference/getVocabVersion.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/reference/index.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/reference/summariseCodeUse.html>
#> ℹ Reading information from
#> <https://darwin-eu.github.io/CodelistGenerator/reference/tableCodeUse.html>
#> ℹ Reading information from <https://darwin-eu-dev.github.io/CohortSurvival/>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/articles/a01_Single_event_of_interest.html>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/articles/a02_Competing_risk_survival.html>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/articles/a03_Further_survival_analyses.html>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/authors.html>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/index.html>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/news/index.html>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/reference/estimateCompetingRiskSurvival.html>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/reference/estimateSingleEventSurvival.html>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/reference/index.html>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/reference/mockMGUS2cdm.html>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/reference/pipe.html>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/reference/plotSurvival.html>
#> ℹ Reading information from
#> <https://darwin-eu-dev.github.io/CohortSurvival/reference/tableSurvival.html>
#> ℹ Reading information from <https://ohdsi.github.io/omock/>
#> ℹ Reading information from
#> <https://ohdsi.github.io/omock/articles/a01_Creating_synthetic_clinical_tables.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/omock/articles/a02_Creating_synthetic_cohorts.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/omock/articles/a03_Creating_a_synthetic_vocabulary.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/omock/articles/a04_Building_a_bespoke_mock_cdm.html>
#> ℹ Reading information from <https://ohdsi.github.io/omock/authors.html>
#> ℹ Reading information from <https://ohdsi.github.io/omock/index.html>
#> ℹ Reading information from <https://ohdsi.github.io/omock/news/index.html>
#> ℹ Reading information from <https://ohdsi.github.io/omock/reference/index.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/omock/reference/mockObservationPeriod.html>
#> ℹ Reading information from
#> <https://ohdsi.github.io/omock/reference/mockPerson.html>
#> ✔ Information retrieved from 295 links.
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#> 7 4848 6438 "# Getting Started\n### Creating a reference to the OMOP C… "Aft…
#> 8 5452 7166 "# Getting Started\n### Creating a reference to the OMOP C… "```…
#> 9 6439 8004 "# Getting Started\n### Creating a reference to the OMOP C… "#> …
#> 10 7167 8834 "# Getting Started\n### Creating a reference to the OMOP C… "#> …
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#> 8 5568 7166 "# Working with cohorts\n## Cohort Generation\n### Atlas c… "#> …
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#> 7 5031 6638 "# DBI connection examples" "### Snowflake…
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#> 9 6639 8171 "# DBI connection examples" "### Databrick…
#> 10 7099 8720 "# DBI connection examples\n### Databricks/Spark" "```r\ncon <- …
#> 11 7362 9015 "# DBI connection examples\n### Databricks/Spark" "To connect to…
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#> 1 1 1427 "" "# U…
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#> 6 4034 5736 "# Using CDM attributes\n## CDM reference attributes\n### … "#> …
#> 7 4820 6318 "# Using CDM attributes\n## CDM reference attributes\n### … "#> …
#> 8 5737 7184 "# Using CDM attributes" "## …
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#> 10 7185 8809 "# Using CDM attributes\n## Cohort attributes\n### Creatin… " c…
#> 11 7792 9137 "# Using CDM attributes\n## Cohort attributes\n### Creatin… "We …
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#> 4 2378 3802 "# [CDMConnector](https://darwin-eu.github.io/CDMConnector/… "A `…
#> 5 3308 4827 "# [CDMConnector](https://darwin-eu.github.io/CDMConnector/… "Use…
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#> 7 4174 5766 "# [CDMConnector](https://darwin-eu.github.io/CDMConnector/… "## …
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#> # @document@origin: https://darwin-eu.github.io/CDMConnector/news/index.html
#> # A tibble: 9 × 4
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#> 3 1419 3306 "# Changelog" "## CDMConnector 2.0.0\n\nCR…
#> 4 2510 4021 "# Changelog" "## CDMConnector 1.6.1\n\nCR…
#> 5 3307 4909 "# Changelog" "## CDMConnector 1.5.0\n\nCR…
#> 6 4022 5654 "# Changelog" "## CDMConnector 1.2.1\n\nCR…
#> 7 4910 6398 "# Changelog" "## CDMConnector 1.0.0\n\nCR…
#> 8 5655 7294 "# Changelog" "## CDMConnector 0.5.1\n\nCR…
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#> 2 829 2453 "# Create a CDM reference object from a database connection… "coh…
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#> 4 2454 4014 "# Create a CDM reference object from a database connection… "Som…
#> 5 2606 4167 "# Create a CDM reference object from a database connection… "You…
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#> * <int> <int> <chr> <chr>
#> 1 1 1659 "" "# C…
#> 2 793 2263 "# Create a copy of an example OMOP CDM dataset" "## …
#> 3 1660 3166 "# Create a copy of an example OMOP CDM dataset" "## …
#> 4 2264 3973 "# Create a copy of an example OMOP CDM dataset\n## Details" "In …
#> 5 2703 4274 "# Create a copy of an example OMOP CDM dataset\n## Details" "Eun…
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#> 1 1 1381 "" "# Package index • CDMConnector…
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#> 5 3154 4961 "# omopgenerics\n## Core classes and methods\n### CDM Refe… "```…
#> 6 4050 5549 "# omopgenerics\n## Core classes and methods\n### CDM Refe… "In …
#> 7 4962 6347 "# omopgenerics\n## Core classes and methods" "###…
#> 8 5550 7195 "# omopgenerics\n## Core classes and methods\n### Concept … "Mea…
#> 9 6348 8010 "# omopgenerics\n## Core classes and methods" "###…
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#> 11 8011 9600 "# omopgenerics\n## Core classes and methods\n### A cohort… "#> …
#> 12 8780 10431 "# omopgenerics\n## Core classes and methods\n### A cohort… "#> …
#> 13 9601 11218 "# omopgenerics\n## Core classes and methods\n### Summaris… "#> …
#> 14 9933 11513 "# omopgenerics\n## Core classes and methods\n### Summaris… "#> …
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#> 4 2277 4053 "# The cdm reference\n### 1) Standard OMOP CDM tables" "```…
#> 5 3092 5040 "# The cdm reference" "###…
#> 6 4054 5396 "# The cdm reference" "###…
#> 7 5041 6385 "# The cdm reference" "###…
#> 8 5397 7157 "# The cdm reference" "## …
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#> 1 1 1524 "" "# Concept sets • omopgenerics\n\n#…
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#>
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#> 1 1 1519 "" "# Cohort …
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#> 9 6318 7809 "# Cohort tables\n## Cohort table" "### Cohor…
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#> 14 10055 11564 "# Cohort tables" "## Export…
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#> 10 7322 8939 "# Expanding omopgenerics\n## Methods" "###…
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#> 1 1 388 "" "# Get attrition from an object. — attrition • omopgeneri…
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#> 1 1 398 "" "# 'codelist' object constructor — newCodelist • omopgene…
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#> 1 1 510 "" "# 'conceptSetExpression' object constructor — newConcept…
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#> 1 1 1512 "" "# Standard tables that a cdm reference can contain in th…
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#> 1 1 351 "" "# Get settings from an object. — settings • omopgenerics…
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#> 1 1 1783 "" "# B…
#> 2 768 2380 "# CohortConstructor\n## Creating and manipulating cohorts" "```…
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#> 4 2381 3774 "# CohortConstructor\n## Creating and manipulating cohorts… "for…
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#> 1 1 1428 "" "# Introduction • CohortConstructor\n\n![](../lo…
#> 2 630 2188 "# Introduction" "## Building a cohort set by domain/ clinical ta…
#> 3 1429 3014 "# Introduction" "## Deriving study cohorts from base cohorts\n\n…
#>
#> [[54]]
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#> 1 1 1635 "" "# B…
#> 2 676 2393 "# Building base cohorts" "## …
#> 3 1636 3170 "# Building base cohorts\n## Concept based cohort creation" "Now…
#> 4 2394 4108 "# Building base cohorts\n## Concept based cohort creation" "#> …
#> 5 3171 4977 "# Building base cohorts\n## Concept based cohort creation" "#> …
#> 6 4109 5595 "# Building base cohorts\n## Concept based cohort creation" "Thi…
#> 7 4978 6427 "# Building base cohorts\n## Concept based cohort creation" "```…
#> 8 5596 7208 "# Building base cohorts\n## Concept based cohort creation" "#> …
#> 9 6428 7978 "# Building base cohorts\n## Concept based cohort creation" "Whe…
#> 10 7209 8767 "# Building base cohorts\n## Concept based cohort creation" "#> …
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#> 1 1 1531 "" "# A…
#> 2 807 2399 "# Applying cohort table requirements" "Let…
#> 3 1532 3383 "# Applying cohort table requirements" "At …
#> 4 2400 4100 "# Applying cohort table requirements\n## Keep only the fi… "```…
#> 5 3384 4728 "# Applying cohort table requirements" "## …
#> 6 4101 5630 "# Applying cohort table requirements" "## …
#> 7 4729 6193 "# Applying cohort table requirements" "## …
#> 8 5631 7056 "# Applying cohort table requirements\n## Applying multipl… "Her…
#> 9 6194 8012 "# Applying cohort table requirements" "## …
#> 10 6533 8087 "# Applying cohort table requirements\n## Keep only record… "As …
#>
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#> 4 2216 3654 "# Applying demographic requirements to a cohort" "## Restrict co…
#>
#> [[57]]
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#> 1 1 1646 "" "# A…
#> 2 791 2467 "# Applying requirements related to other cohorts, concept … "Let…
#> 3 1647 3039 "# Applying requirements related to other cohorts, concept … "## …
#> 4 2468 3919 "# Applying requirements related to other cohorts, concept … "The…
#> 5 3040 4892 "# Applying requirements related to other cohorts, concept … "```…
#> 6 3920 5704 "# Applying requirements related to other cohorts, concept … "```…
#> 7 4536 6068 "# Applying requirements related to other cohorts, concept … "Ins…
#>
#> [[58]]
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#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 1368 "" "# U…
#> 2 805 2247 "# Updating cohort start and end dates\n## Introduction" "**C…
#> 3 1369 3368 "# Updating cohort start and end dates\n## Introduction" "```…
#> 4 2248 3829 "# Updating cohort start and end dates\n## Exit at Specifi… "###…
#> 5 3369 4811 "# Updating cohort start and end dates\n## Exit at Specifi… "###…
#> 6 3830 5572 "# Updating cohort start and end dates\n## Cohort Entry or… "###…
#> 7 4812 6289 "# Updating cohort start and end dates\n## Cohort Entry or… " …
#> 8 5573 7204 "# Updating cohort start and end dates\n## Cohort Entry or… "#> …
#> 9 6290 7896 "# Updating cohort start and end dates\n## Cohort Entry or… "###…
#> 10 7205 8837 "# Updating cohort start and end dates\n## Cohort Entry or… "#> …
#> 11 7897 9699 "# Updating cohort start and end dates\n## Cohort Entry or… "###…
#> 12 8838 10422 "# Updating cohort start and end dates\n## Cohort Entry or… "#> …
#> 13 9700 11392 "# Updating cohort start and end dates\n## Cohort Entry or… "###…
#> 14 10423 12089 "# Updating cohort start and end dates\n## Cohort Entry or… "#> …
#> 15 11393 12859 "# Updating cohort start and end dates" "## …
#> 16 12090 13785 "# Updating cohort start and end dates\n## Trim Dates Func… "```…
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#> 18 13786 15605 "# Updating cohort start and end dates\n## Pad Dates Funct… "###…
#>
#> [[59]]
#> # @document@origin:
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#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 1619 "" "# Concatenating cohort records …
#> 2 708 2370 "# Concatenating cohort records" "```r\ncdm$medications <- concep…
#> 3 1620 3203 "# Concatenating cohort records" "Let’s compare how this function…
#> 4 2317 3921 "# Concatenating cohort records" " filter(subject_id == 1)\n#> #…
#>
#> [[60]]
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#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 1409 "" "# Filtering cohorts • CohortConstructor\n\…
#> 2 722 2374 "# Filtering cohorts" "```r\ncdm$medications <- conceptCohort(cdm…
#> 3 1410 3027 "# Filtering cohorts" "```r\ncdm$medications |> sampleCohorts(coh…
#> 4 2375 4032 "# Filtering cohorts" "#> 10 2 364 1983…
#> 5 2911 4541 "# Filtering cohorts" "It is also possible to only sample one coh…
#>
#> [[61]]
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#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 1610 "" "# Splitting cohorts •…
#> 2 812 2412 "# Splitting cohorts\n## Introduction" "```r\nrequireEunomia(…
#> 3 1611 3214 "# Splitting cohorts\n## Introduction" "#> 2 …
#> 4 2413 3841 "# Splitting cohorts\n## stratifyCohorts" " requireSex(sex = \"…
#> 5 3215 5029 "# Splitting cohorts\n## stratifyCohorts" "#> <…
#> 6 3842 5626 "# Splitting cohorts\n## stratifyCohorts" "```r\ncdm$medications…
#> 7 5030 6398 "# Splitting cohorts\n## stratifyCohorts" "Now we can use the fu…
#> 8 5627 7218 "# Splitting cohorts\n## stratifyCohorts" "#> 3 …
#> 9 6399 8012 "# Splitting cohorts\n## stratifyCohorts" "Note that both cohort…
#> 10 7219 8817 "# Splitting cohorts\n## stratifyCohorts" "\ncohortCount(cdm$str…
#> 11 8013 9485 "# Splitting cohorts\n## stratifyCohorts" "#> # A tibble: 232 × …
#> 12 8818 10416 "# Splitting cohorts\n## stratifyCohorts" "#> 9 …
#> 13 9486 11208 "# Splitting cohorts" "## yearCohorts\n\n`[y…
#> 14 10417 11955 "# Splitting cohorts\n## yearCohorts" "#> 1 …
#> 15 11209 12760 "# Splitting cohorts\n## yearCohorts" "#> # A tibble: 8 × 3\…
#> 16 11956 13634 "# Splitting cohorts\n## yearCohorts" "```r\ncdm$medications…
#> 17 12376 13943 "# Splitting cohorts\n## yearCohorts" "#> 2 …
#>
#> [[62]]
#> # @document@origin:
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#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 1751 "" "# Combining Cohorts • CohortConstructor\n\…
#> 2 718 2406 "# Combining Cohorts" "```r\ncdm$medications <- conceptCohort(cdm…
#> 3 1752 3072 "# Combining Cohorts" "There are 6 individuals who had overlappin…
#> 4 2407 4027 "# Combining Cohorts" "We can also combine different cohorts usin…
#> 5 2517 4144 "# Combining Cohorts" "```r\ncdm$medunion <- CohortConstructor::u…
#>
#> [[63]]
#> # @document@origin:
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#> # A tibble: 6 × 4
#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 1626 "" "# G…
#> 2 997 2360 "# Generating a matched cohort" "## …
#> 3 1627 3339 "# Generating a matched cohort\n## Use matchCohorts() to cr… "Not…
#> 4 2361 3761 "# Generating a matched cohort\n## Use matchCohorts() to cr… "```…
#> 5 3340 4935 "# Generating a matched cohort\n## Use matchCohorts() to cr… "###…
#> 6 3495 5023 "# Generating a matched cohort\n## Use matchCohorts() to cr… "###…
#>
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#> 2 832 2387 "# CohortConstructor benchmarking results\n## Introduction" "via…
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#> 4 2388 4020 "# CohortConstructor benchmarking results\n## Introduction" "Onc…
#> 5 3186 4780 "# CohortConstructor benchmarking results\n## Introduction" "#> …
#> 6 4021 5601 "# CohortConstructor benchmarking results\n## Introduction" "###…
#> 7 4781 6411 "# CohortConstructor benchmarking results\n## Introduction… "**O…
#> 8 5602 7243 "# CohortConstructor benchmarking results\n## Introduction… "| p…
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#>
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#> 1 1 1413 "" "# Behind the scenes • CohortConstructor\n…
#> 2 747 2429 "# Behind the scenes" "```r\nlibrary(CDMConnector)\nlibrary(Code…
#> 3 1414 3206 "# Behind the scenes" "To capture all the SQL executed as we use…
#> 4 2430 4002 "# Behind the scenes" " cat(sql_with_quotes, \"\\n```\\n\\n\")\…
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#> 7 4797 6396 "# Behind the scenes" "#> ### /tmp/RtmpBZAy8e/sql_folder/logged_…
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#> 9 6397 8014 "# Behind the scenes" "#> WHERE (NOT((gender_concept_id IS NULL)…
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#> 11 8015 9595 "# Behind the scenes" "*,\n#> SUM(date_id) OVER (PARTITION B…
#> 12 8795 10412 "# Behind the scenes" "#> subject_id,\n#> MAX(CASE WHEN (\"n…
#> 13 9596 11213 "# Behind the scenes" "````r\ndir_explain <- file.path(tempdir()…
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#> 15 10752 12347 "# Behind the scenes" "#> │ #0 │\n#> │ …
#>
#> [[66]]
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#> 1 1 1783 "" "# B…
#> 2 768 2380 "# CohortConstructor\n## Creating and manipulating cohorts" "```…
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#> 4 2381 3774 "# CohortConstructor\n## Creating and manipulating cohorts… "for…
#> 5 3187 4799 "# CohortConstructor\n## Creating and manipulating cohorts… "```…
#> 6 3775 5627 "# CohortConstructor\n## Creating and manipulating cohorts… "```…
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#> 10 7073 8904 "# CohortConstructor\n## Creating and manipulating cohorts" "###…
#> 11 7996 9593 "# CohortConstructor\n## Creating and manipulating cohorts… "#> …
#>
#> [[68]]
#> # @document@origin: https://ohdsi.github.io/CohortConstructor/news/index.html
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#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 429 "" "# Changelog • CohortConstructor\n\n\n\n#…
#>
#> [[69]]
#> # @document@origin:
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#> # A tibble: 8 × 4
#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 1420 "" "# Create…
#> 2 825 2389 "# Create cohorts based on a concept set" "Cohort e…
#> 3 1421 2971 "# Create cohorts based on a concept set" "## Argum…
#> 4 2390 4007 "# Create cohorts based on a concept set\n## Arguments" "useSourc…
#> 5 2972 4821 "# Create cohorts based on a concept set" "## Examp…
#> 6 4008 5607 "# Create cohorts based on a concept set\n## Examples" "#> 5 …
#> 7 4822 6363 "# Create cohorts based on a concept set\n## Examples" " …
#> 8 5608 7199 "# Create cohorts based on a concept set\n## Examples" "#> 3 …
#>
#> [[70]]
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#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 1561 "" "# Packa…
#> 2 1002 2388 "# Package index" "### Imp…
#> 3 1562 3243 "# Package index" "### Imp…
#> 4 2389 4030 "# Package index\n### Update cohort start and end dates" "`[exitA…
#> 5 3095 4669 "# Package index" "### Con…
#>
#> [[71]]
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#> # A tibble: 3 × 4
#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 1597 "" "# Add days to cohort en…
#> 2 729 2370 "# Add days to cohort end" "## Usage\n\n```r\npadCo…
#> 3 1360 3038 "# Add days to cohort end\n## Arguments" "cohortId\n: Vector id…
#>
#> [[72]]
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#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 1629 "" "# R…
#> 2 897 2365 "# Require cohort subjects are present (or absence) in anot… "## …
#> 3 1630 3185 "# Require cohort subjects are present (or absence) in anot… "ind…
#> 4 2366 4077 "# Require cohort subjects are present (or absence) in anot… ".so…
#>
#> [[73]]
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#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 1592 "" "# Rest…
#> 2 705 2160 "# Restrict cohort on patient demographics" "## Arg…
#> 3 1593 3192 "# Restrict cohort on patient demographics\n## Arguments" "name\n…
#> 4 2059 3417 "# Restrict cohort on patient demographics" "## Val…
#>
#> [[74]]
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#> start end context text
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#> 1 1 1740 "" "# R…
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#> 3 1341 3019 "# Require that an index date is within a date range\n## Ar… ".so…
#>
#> [[75]]
#> # @document@origin:
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#> # A tibble: 2 × 4
#> start end context text
#> * <int> <int> <chr> <chr>
#> 1 1 1739 "" "# Genera…
#> 2 460 2116 "# Generate cohort from the union of different cohorts" "## Usage…
#>
#> [[76]]
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#> 1 1 1561 "" "# Graphs and Tables…
#> 2 593 2347 "# visOmopResults" "## Let’s get starte…
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#> 4 2348 3893 "# visOmopResults\n## Tables visualisations" "`[visTable()](refer…
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#> 1 1 1669 "" "# Tab…
#> 2 1019 2274 "# Tables\n## Introduction" "Altho…
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#> 5 3175 4552 "# Tables\n## Main Functions\n### visTable()" "We ca…
#> 6 3987 5691 "# Tables\n## Main Functions\n### visTable()" "| Ade…
#> 7 4553 6431 "# Tables\n## Main Functions\n### visTable()" "```r\…
#> 8 5692 7190 "# Tables\n## Main Functions" "### v…
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#> # ℹ 31 more rows
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#> 1 1 1612 "" "# P…
#> 2 744 2613 "# Plots\n## Plotting with a `<summarised_result>`" "```…
#> 3 1613 3263 "# Plots\n## Plotting with a `<summarised_result>`" "#> …
#> 4 2614 3991 "# Plots\n## Plotting with a `<summarised_result>`" "###…
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#> 14 10003 11359 "# Plots" "## …
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#> 1 1 820 "" "# Authors and Citation • visOmopResults\n\n…
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#> 1 1 1561 "" "# Graphs and Tables…
#> 2 593 2347 "# visOmopResults" "## Let’s get starte…
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#> 4 2348 3893 "# visOmopResults\n## Tables visualisations" "`[visTable()](refer…
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#>
#> [[82]]
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#> start end context text
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#> 1 1 1362 "" "# Create a bar plot visualisation from a <summarised_res…
#>
#> [[83]]
#> # @document@origin:
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#> start end context text
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#> [[152]]
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#>
#> [[155]]
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#> [[156]]
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#>
#> [[157]]
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#>
#> [[158]]
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#> [[159]]
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#>
#> [[160]]
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#>
#> [[161]]
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#> [[162]]
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#>
#> [[164]]
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#>
#> [[165]]
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#> [[167]]
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#> [[170]]
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#> [[171]]
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#> 1 1 410 "" "# Pipe operator — %>% • DrugExposureDiagnostics\n\n# Pip…
#>
#> [[172]]
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#>
#> [[174]]
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#>
#> [[175]]
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#>
#> [[177]]
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#> [[179]]
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#> 9 6363 7983 "# Adding cohort intersections\n## Identifying cohort inte… "```…
#> 10 7290 8818 "# Adding cohort intersections\n## Identifying cohort inte… "```…
#> 11 7984 9547 "# Adding cohort intersections" "## …
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#> 13 9548 11327 "# Adding cohort intersections\n## Options for identifying… "Whe…
#> 14 10366 12026 "# Adding cohort intersections\n## Options for identifying… "```…
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#> [[182]]
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#> 7 4657 6302 "# Adding concept intersections\n## Adding variables from … "```…
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#> 9 6303 8182 "# Adding concept intersections\n## Adding variables from … "```…
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#> 14 10279 12001 "# Adding concept intersections" "## …
#> 15 11183 12729 "# Adding concept intersections\n## Cohort-based versus co… "```…
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#> [[183]]
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#> 9 6469 7989 "# Adding patient demographics\n## Adding characteristics … "```…
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#> # ℹ 14 more rows
#>
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#> 9 6414 8052 "# Summarise result\n## Summarise our first table" "#> $…
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#>
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#> [[273]]
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#> [[275]]
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#> [[279]]
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#> [[281]]
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#> start end context text
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#> [[282]]
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#> [[284]]
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#> [[287]]
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