Summarise code use in patient-level data

Usage

summariseConceptCounts(
  cdm,
  conceptId = NULL,
  countBy = c("record", "person"),
  concept = TRUE,
  year = FALSE,
  sex = FALSE,
  ageGroup = NULL
)

Arguments

cdm: A cdm object
conceptId: List of concept IDs to summarise. If NULL, all concepts from the concept table will be used
countBy: Either "record" for record-level counts or "person" for person-level counts
concept: TRUE or FALSE. If TRUE code use will be summarised by concept.
year: TRUE or FALSE. If TRUE code use will be summarised by year.
sex: TRUE or FALSE. If TRUE code use will be summarised by sex.
ageGroup: If not NULL, a list of ageGroup vectors of length two. Code use will be thus summarised by age groups.

Value

A tibble with results overall and, if specified, by strata

Examples

if (FALSE) { # \dontrun{
con <- DBI::dbConnect(duckdb::duckdb(),
                      dbdir = CDMConnector::eunomia_dir())
cdm <- CDMConnector::cdm_from_con(con,
                                  cdm_schem = "main",
                                  write_schema = "main")
acetaminophen <- c(1125315,  1127433, 40229134,
40231925, 40162522, 19133768,  1127078)
poliovirus_vaccine <- c(40213160)
cs <- list(acetaminophen = acetaminophen,
          poliovirus_vaccine = poliovirus_vaccine)
results <- summariseConceptCounts(cdm, conceptId = cs)
results
PatientProfiles::mockDisconnect(cdm)
} # }