Package index

Snapshots

Create snapshots of OMOP databases

summariseOmopSnapshot()

Summarise OMOP database and create snapshot

tableOmopSnapshot()

Create a gt table from a summarised omop snapshot

Clinical Tables

Summarise and plot tables in the OMOP Common Data Model

summariseClinicalRecords()

Summarise an omop table from a cdm object. You will obtain information related to the number of records, number of subjects, whether the records are in observation, number of present domains and number of present concepts.

tableClinicalRecords()

Create a gt table from a summarised omop_table.

summariseRecordCount()

Create a summarise result object to summarise record counts of an omop_table using a specific time interval. Only records that fall within the observation period are counted.

plotRecordCount()

Create a ggplot of the records' count trend.

Observation Periods

Summarise and plot the observation period table in the OMOP Common Data Model

summariseObservationPeriod()

Summarise the observation period table getting some overall statistics in a summarised_result object.

plotObservationPeriod()

Create a plot from the output of summariseObservationPeriod().

tableObservationPeriod()

Create a table from the output of summariseObservationPeriod().

summariseInObservation()

Create a summarised result with the number of people in observation during a specific interval of time.

plotInObservation()

Create a gt table from a summarised omop_table.

Counts

Summarise concept code use in the OMOP Common Data Model

summariseConceptCounts()

Summarise code use in patient-level data

plotConceptCounts()

Title

Individual Characteristics

Summarise characteristics of the individuals in the OMOP Common Data Model

summarisePopulationCharacteristics()

Summarise the characteristics of the base population of a cdm object.

tablePopulationCharacteristics()

Create a gt table from a summarised population characteristics table.

Mock Database

Create a mock database to test the OmopSketch package

mockOmopSketch()

It creates a mock database for testing OmopSketch package